Step 1: In a medium sized bowl, mash together the goat cheese and ricotta. Stir in the spinach, cream, egg, basil, and 4 tablespoons of the grated cheese. Season generously with pepper. *NOTE* The filling can be made up to 24 hours ahead. Cover tightly with plastic wrap and refrigerate. Let the filling return to room temperature before proceeding.
Step 2: Bring a large pot of water to a boil and stir in 1 tablespoon of salt.
Step 3: Add the pasta and cook, stirring occasionally, until just tender, 10-12 minutes. Drain, rinse with cold water, and drain again.
Step 4: Position a rack in the upper third of the oven and preheat to 400-degrees F.
Step 5: Spoon 1 cup of the tomato sauce over the bottom of a large, shallow baking dish.
Step 6: Stuff each shell with about 1 heaping tablespoon of filling and place in the baking dish, filling side up.
Step 7: Drizzle the remaining tomato sauce evenly over the stuffed shells.
Step 8: In a small bowl combine the bread crumbs and remaining grated cheese. Sprinkle the mixture evenly over the shells.
Step 9: Bake until the sauce is bubbling and the top is slightly browned, 30-40 minutes. Let the pasta settle about 10 minutes before serving.
Step 10: In a medium-size, nonreactive saucepan over moderate heat, warm the oil.
Step 11: Add the onion, garlic, and jalapeno; cover and cook, stirring occasionally, until the onion is tender, about 15 minutes.
Step 12: Add the tomatoes, breaking them up with a spoon, their juices, and the salt. Bring to a boil, lower the heat, and simmer, partially covered, stirring occasionally, for 30 minutes.
Step 13: Uncover and continue to cook, until the tomatoes sauce is reduced by about on-third, 25-30 minutes. Cool slightly.
Step 14: Puree the sauce in a food processor or force through the medium blade of a food mill. Cool completely, cover, and refrigerate.
Step 15: I tend to make extra of the sauce, but it's up to you.
Step 16: (The sauce can be made up to 3 days ahead and refrigerated, or it can be frozen and then thawed out).
Step 17: Makes about 3 cups.
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